Publications | НОЦ «Центр геномных исследований» СФУ

Semerikov V. L., S. A. Semerikova, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky, 2019 Mitochondrial DNA in Siberian conifers indicates multiple post-glacial colonization centers. Canadian Journal of Forest Research (accepted)
Krutovsky, K. V., Y. A. Putintseva, N. V. Oreshkova, E. I. Bondar, V. V. Sharov, D. A. Kuzmin, 2019 Postgenomic technologies in practical forestry: development of genome-wide markers for timber origin identification and other applications. Forest Engineering Journal (accepted) (http://lestehjournal.ru/)
Oreshkova, N. V., E. I. Bondar, Yu. A. Putintseva, V. V. Sharov, D. A. Kuzmin, K. V. Krutovsky, 2019 Development of nuclear microsatellite markers with long (tri-, tetra-, penta-and hexanucleotide) motives for three larch species based on the de novo whole genome sequencing of Siberian larch (Larix sibirica Ledeb.). Russian Journal of Genetics 55(4): 444-450
Pettenkofer, T.A., K. Burkardt, C. Ammer, T. Vor, R. Finkeldey, M. Müller, K. V. Krutovsky, B. Vornam, L. Leinemann, O. Gailing, 2019 Genetic diversity and diferentiation of introduced red oak (Quercus rubra) in Germany in comparison with reference native North American populations. European Journal of Forest Research Published online: 06 February 2019 https://doi.org/10.1007/s10342-019-01167-5
Semizer-Cuming, D., K. V. Krutovsky, Y. N. Baranchikov, E. D. Kjӕr, C. G. Williams, 2019 Saving the world’s ash forests calls for international cooperation now. Nature Ecology and Evolution 3(2): 141–144 https://www.nature.com/articles/s41559-018-0761-6
Bondar, E. I., Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky, 2019 Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers. BMC Bioinformatics 20(Suppl. 1): 38 https://doi.org/10.1186/s12859-018-2571-x
Kuzmin, D. A., S. I. Feranchuk, V. V. Sharov, A. N. Cybin, S. V. Makolov, Y. A. Putintseva, N. V. Oreshkova, K. V. Krutovsky, 2019 Stepwise large genome assembly approach: a case of Siberian larch (Larix sibirica Ledeb.). BMC Bioinformatics 20(Suppl. 1): 37 https://doi.org/10.1186/s12859-018-2570-y
Kryvokhyzha, M. V., K. V. Krutovsky, N. M. Rashydova, 2018 Expression of flowering genes in Arabidopsis thaliana under acute and chronic irradiation. International Journal of Radiation Biology https://doi.org/10.1080/09553002.2019.1562251
Breidenbach, N., O. Gailing, K. V. Krutovsky, 2019 Development of novel polymorphic nuclear and chloroplast microsatellite markers in coast redwood (Sequoia sempervirens). Plant Genetic Resources https://doi.org/10.1017/S147926211800045X Published online: 04 December 2018
Caré, O., M. Müller, B. Vornam, A. M. Höltken, K. Kahlert, K. V. Krutovsky, O. Gailing, L. Leinemann, 2018 Hight morphological differentiation in crown architecture is weakly reflected in the population genetic structure of German Norway spruce stands. Forests 9(12): 752 doi: 10.3390/f9120752 https://www.mdpi.com/1999-4907/9/12/752/htm
Shestibratov, K. A., O. Yu. Baranov, N. M. Subbotina, V. G. Lebedev, S. V. Panteleev, K. V. Krutovsky, V. E. Padutov, 2018 Early detection and identification of the main fungal pathogens for resistance evaluation of new genotypes of forest trees. Forests 9(12): 732; https://doi.org/10.3390/f9120732
Lu, M., C. M. Seeve, C. A. Loopstra, K. V. Krutovsky, 2018 Exploring the genetic basis of gene transcript abundance and metabolite level in loblolly pine (Pinus taeda L.) using association mapping and network construction. BMC Genetics 19:100 https://doi.org/10.1186/s12863-018-0687-7
Cuervo-Alarcon, L., M. Arend, M. Müller, C. Sperisen, R. Finkeldey, K. V. Krutovsky, 2018 Genetic variation and signatures of natural selection in populations of European beech (Fagus sylvatica L.) along precipitation gradients. Tree Genetics & Genomes 14:84 https://doi.org/10.1007/s11295-018-1297-2
Simonov, E., A. Lisachov, N. Oreshkova, K. V. Krutovsky, 2018 The mitogenome of Elaphe bimaculata (Reptilia: Colubridae) has never been published: a case with the complete mitochondrial genome of E. dione. Acta Herpetologica (published online) doi: 10.13128/Acta_Herpetol-23394
Müller, M., L. Cuervo-Alarcon, O. Gailing, Rajendra K.C., M. S. Chhetri, S. Seifert, M. Arend, K. V. Krutovsky, R. Finkeldey, 2018 Genetic variation of European beech populations and their progeny from northeast Germany to southwest Switzerland. Forests 9(8): 469. doi:10.3390/f9080469. https://doi.org/10.3390/f9080469
Liu, C. L. C., O. Kuchma, K. V. Krutovsky, 2018 Mixed cropping versus monocultures in plantation forestry: development, benefits, ecosystem services and perspectives for the future. Global Ecology and Conservation 15: e00419. doi: 10.1016/j.gecco.2018.e00419. https://doi.org/10.1016/j.gecco.2018.e00419
Nawaz, M. A., K. V. Krutovsky, M. Müller, O. Gailing, A. A. Khan, A. Buerkert, M. Wiehle, 2018 Morphological and genetic diversity of sea buckthorn (Hippophae rhamnoides L.) in the Karakoram Mountains of Northern Pakistan. Diversity 10(3): 76; https://doi.org/10.3390/d10030076
Kornienko, I.V., T.G. Faleeva, N.V. Oreshkova, S.E. Grigoriev, L.V. Grigoreva, E.P. Simonov, Yu.A. Putintseva, K.V. Krutovsky, 2018 Structural and functional organization and heteroplasmy of the D-loop control region in the completely sequenced mitochondrial genome of the woolly mammoth (Mammuthus primigenius) from Maly Lyakhovsky Island in Laptev Sea. Mitochondrial DNA Part B. Resources 3(2): 596-598 http://dx.doi.org/10.1080/23802359.2018.1473721
Pavlov, I. N., Y. A Litovka, T. V. Ryazanova, N. A. Chuprova, Y. A. Putintseva, K. V. Krutovsky, 2018 Pathogenic and wood-destroying properties of Porodaedalea niemela M. Fischer in the open woodlands of Larix gmelinii in the permafrost area. Journal of Siberian Federal University. Biology 11(1): 30-48 DOI: 10.17516/1997-1389-0039 http://elib.sfu-kras.ru/bitstream/2311/70290/8/03_Pavlov_15_05.pdf
Semerikov, V.L., S.A. Semerikova, Y.A. Putintseva, V. V. Tarakanov, I. V. Tikhonova, A. I. Vidyakin, N.V. Oreshkova, and K.V. Krutovsky, 2018 Colonization history of Scots pine in Eastern Europe and North Asia based on mitochondrial DNA variation. Tree Genetics and Genomes 14:8 https://doi.org/10.1007/s11295-017-1222-0
Ali, H. B. M., A. Abubakari, M. Wiehle, K. V. Krutovsky, 2018 Gene-specific sex-linked genetic markers in date palm (Phoenix dactylifera L.). Genetic Resources and Crop Evolution 65(1): 1-10 https://doi.org/10.1007/s10722-017-0564-7
Moskalev, A. А., A. V. Kudryavtseva, A. S. Grafodatsky, V. R. Beklemisheva, N. A. Serdyukova, K. V. Krutovsky, V. V. Sharov, I. V. Kulakovsky, A. S. Lando, A. S. Kasianov, A. V. Snezhkina1, D. A. Kuzmin, Y. A. Putintseva, S. I. Feranchuk, M. V. Shaposhnikov, V. Fraifeld1, M. Toren, V. V. Sitnik, 2017 De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus. BMC Evolutionary Biology 17(Suppl 2):258; doi:10.1186/s12862-017-1103-z https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-017-1103-z
Johnson, J.S., P. Chhetri, K. V. Krutovsky, and D. M. Cairns, 2017 Growth and its relationship to individual genetic diversity of mountain hemlock (Tsuga mertensiana) at alpine treeline in Alaska: combining dendrochronology and genomics. Forests 8(11): 418; doi:10.3390/f8110418; http://www.mdpi.com/1999-4907/8/11/418
Oreshkova, N. V., Yu. A. Putintseva, V. V. Sharov, D. A. Kuzmin, and K. V. Krutovsky, 2017 Development of microsatellite genetic markers in Siberian larch (Larix sibirica Ledeb.) based on the de novo whole genome sequencing. Russian Journal of Genetics 53(11): 1194–1199; doi: 10.1134/S1022795417110096; https://doi.org/10.1134/S1022795417110096
Abdulai, I., K. V. Krutovsky, R. Finkeldey, 2017 Morphological and genetic diversity of Shea tree (Vitellaria paradoxa) in the Savannah regions of Ghana. Genetic Resources and Crop Evolution 64(6):1253–1268; doi: 10.1007/s10722-016-0434-8; https://link.springer.com/article/10.1007/s10722-016-0434-8
Lu, M., K. V. Krutovsky, C.D. Nelson, J. B. West, N. A. Reilly, and C. A. Loopstra, 2017 Association genetics of growth and adaptive traits in loblolly pine (Pinus taeda L.) using whole exome-discovered polymorphisms. Tree Genetics and Genomes 13(3): 57; doi: 10.1007/s11295-017-1140-1; http://link.springer.com/article/10.1007/s11295-017-1140-1
Johnson, J.S., K. D. Gaddis, D. M. Cairns, K. Konganti, and K. V. Krutovsky, 2017 Landscape genomic insights into the historic migration of mountain hemlock in response to Holocene climate change. American Journal of Botany 104(3): 439-450; doi: 10.3732/ajb.1600262; http://www.amjbot.org/content/104/3/439.short
Johnson, J.S., K. D. Gaddis, D. M. Cairns, and K. V. Krutovsky, 2017 Seed dispersal at alpine treeline: an assessment of seed movement within the alpine treeline ecotone. Ecosphere 8(1):e01649; doi: 10.1002/ecs2.1649; http://onlinelibrary.wiley.com/doi/10.1002/ecs2.1649/full
Lu, M., K. V. Krutovsky, C.D. Nelson, T. E. Koralewski, T. D. Byram, and C. A. Loopstra, 2016 Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.). BMC Genomics 17:730; doi: 10.1186/s12864-016-3081-8; http://rdcu.be/nmd3, http://www.biomedcentral.com/content/pdf/s12864-016-3081-8.pdf
Belokon, M. M., D. V. Politov, E. A. Mudrik, T. A. Polyakova, A. V. Shatokhina, Yu. S. Belokon, N. V. Oreshkova, Yu. A. Putintseva, V. V. Sharov, D. A. Kuzmin, and K. V. Krutovsky, 2016 Development of Microsatellite Genetic Markers in Siberian Stone Pine (Pinus sibirica Du Tour) Based on the De Novo Whole Genome Sequencing. Russian Journal of Genetics 52(12): 1263–1271; doi: 10.1134/S1022795416120036, https://link.springer.com/content/pdf/10.1134%2FS1022795416120036.pdf)
Johnson, J.S., K. D. Gaddis, D. M. Cairns, C. W. Lafon, and K. V. Krutovsky, 2016 Plant responses to global change: Next generation biogeography. Physical Geography 37(2): 93–119; doi: 10.1080/02723646.2016.1162597; https://doi.org/10.1080/02723646.2016.1162597
Sadovsky, M. G., Y. A. Putintseva, V. V. Birukov, S. Novikova, and K. V. Krutovsky, 2016 De novo assembly and cluster analysis of Siberian larch transcriptome and genome. Lecture Notes in Computer Science 9656: 455-464; doi: 10.1007/978-3-319-31744-1_41, https://link.springer.com/chapter/10.1007/978-3-319-31744-1_41
Babushkina, E. A., E. A. Vaganov, A. M. Grachev, N. V. Oreshkova, L. V. Belokopytova, T. V. Kostyakova , and K. V. Krutovsky, 2016 The effect of individual genetic heterozygosity on general homeostasis, heterosis and resilience in Siberian larch (Larix sibirica Ledeb.) using dendrochronology and microsatellite loci genotyping. Dendrochronologia 38: 26-37; https://doi.org/10.1016/j.dendro.2016.02.005
Sadovsky, M. G., V. V. Birukov, Y. A. Putintseva, N. V. Oreshkova, E. A. Vaganov, and K. V. Krutovsky, 2015 Symmetry of Siberian larch transcriptome. Journal of Siberian Federal University. Biology 8(3): 278-286; doi: 10.17516/1997-1389-2015-8-3-278-286 (http://elib.sfu-kras.ru/bitstream/handle/2311/19898/02_Sadovsky.pdf)
Sadovsky, M. G., E. I. Bondar, Y. A. Putintseva, N. V. Oreshkova, E. A. Vaganov, and K. V. Krutovsky, 2015 Seven-cluster structure of chloroplast genome. Journal of Siberian Federal University. Biology 8(3): 268-277; doi: 10.17516/1997-1389-2015-8-3-268-277 (http://elib.sfu-kras.ru/bitstream/handle/2311/19897/01_Sadovsky.pdf)
Semerikov, V.L., Y.A. Putintseva, N.V. Oreshkova, S.A. Semerikova, and K.V. Krutovsky, 2015 Development of new mitochondrial DNA markers in Scots pine (Pinus sylvestris L.) for population and phylogeographic studies. Russian Journal of Genetics 51(12): 1199–1203; https://doi.org/10.1134/S1022795415120108
Krutovsky, K. V., 2014 Prospects for genomic research in forestry. Siberian Journal of Forest Science 1(4): 11-15.
Shilkina, Е. А., N. V. Oreshkova, А. А. Ibe, K. O. Deich, and K. V. Krutovsky, 2014 Development of cytoplasmatic SSR-markers in Pinus sibirica Du Tour for population genetic studies. Siberian Journal of Forest Science 1(4): 21-24.
Krutovsky, K. V., N. V. Oreshkova, Yu. A. Putintseva, А. А. Ibe, K. O. Deich, and Е. А. Shilkina, 2014 Preliminary results of de novo whole genome sequencing of Siberian larch (Larix sibirica Ledeb.) and Siberian stone pine (Pinus sibirica Du Tour.). Siberian Journal of Forest Science 1(4): 79-83.
Krutovsky, K. V., I. N. Tretyakova, N. V. Oreshkova, M. E. Pak, O. V. Kvitko, and E. A. Vaganov, 2014 Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibirica Ledeb.) megagametophytes for whole genome de novo sequencing. In Vitro Cellular and Developmental Biology – Plant 50(5): 655-664.